Daizu-net
  
v3
  
for functional genomics research of soybean
  
V3 gene search  : 
  
[Last update: Sep 1st, 2026]
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V4 (pre-publication preview)
JBrowse2
   Launch JB2
URLs of Dotplot & Synteny
🔗 202 G.max nr-lines (NARO CC) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
🔗 462 G.max nr-lines (CC, cultivars) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
i-TILLING
🔗 202 G.max nr-lines (NARO CC) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
🔗 462 G.max nr-lines (CC, cultivars) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
🔗 997 Enrei EMS mutants
(preview)
▶
🚧🚧🚧 Enrei v3.31
🚧🚧🚧 Williams 82 v4 Gmax_508
RNAseq Atlas
Co-expression
🔗 Tissue-wdie 44 RNAseq (Enrei, Wm82)
GO analysis
BLAST
Short DNA mapper
Sequence analysis
Primer finder
Clustalw (fasta input)
ORF finder
Tm calculation
Download
ClustalW alignment
    
for fasta
query (input):
! Enter DNA or protein amino acid sequences like below. For trial, just click "search" button. >seq1 ATGGAGAGAATTTCACAAAAGGAACATGTTTTAGTTGATTATGGTCCACAAAGATCTTTTGAGGGTTCACCAAGTGATATGGACATGGATTTTAACGATGTTTTCGGAGGTCCACCGAGGCGATTTTCAGTACAAGAAGCAAGAACAAGGCACAGTTTCAATGATTCAGTAGAATCTGAAGAGGATTCAGCAGGTGTATCGCGAAATTCGTGGAATGGATTC >seq2[rc] GACCAATCCATTCCACCCCTTTCGCGATACACCTGCTGAATCCTCTTCAGATTCTACTGAATCTAAGAAACTGTGCCTTGTTCTTGCTACTTGTACTGAAAATCGCCTCGGTGGACCTGCGAAAACATCGTTAAAATCCATGTCCATATCACTTGGTCAACCCTCAAAAGATCTTTGTGGACCATAATCTACTAAAACATGTTCCTTTTGTGCAATTCTCTCCAT >seq3 ATGGAGAACAACAACAGTGAATTGCACAAAAGGACAAAGATCTTTTGAGGGTTGACCAAGTGATATGGACATGGATTTTAACGATGTTTTCGCAGGTCCACCGAGGCGATTTTCAGTACAAGTAGCAAGAATCTGAAGAGGATTCAGCAGGTGTATCTGGAAAGGGGTGGAATGGATTC
Method:
forward strand
reverse complement strand
Alignment setting:
Fast (score=absolute, gapopen=20, gapext=0.50)
Fast (score=absolute, gapopen=10, gapext=0.10)
Fast (score=absolute, gapopen=5, gapext=0.05)
Fast (score=absolute, gapopen=1, gapext=0.01)
Fast (score=percent, gapopen=20, gapext=0.50)
Fast (score=percent, gapopen=10, gapext=0.10)
Fast (score=percent, gapopen=5, gapext=0.05)
Fast (score=percent, gapopen=1, gapext=0.01)
Slow (gapopen=20, gapext=0.50)
Slow (gapopen=10, gapext=0.10)
Slow (gapopen=5, gapext=0.05)
Slow (gapopen=1, gapext=0.01)
[! Result will be shown below]