Daizu-net
  
v3
  
for functional genomics research of soybean
  
V3 gene search  : 
  
[Last update: Sep 1st, 2026]
TOP
V4 (pre-publication preview)
JBrowse2
   Launch JB2
URLs of Dotplot & Synteny
🔗 202 G.max nr-lines (NARO CC) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
🔗 462 G.max nr-lines (CC, cultivars) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
i-TILLING
🔗 202 G.max nr-lines (NARO CC) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
🔗 462 G.max nr-lines (CC, cultivars) ▶
🧬 Enrei v3.31
🧬 Williams 82 v4 Gmax_508
🔗 997 Enrei EMS mutants
(preview)
▶
🚧🚧🚧 Enrei v3.31
🚧🚧🚧 Williams 82 v4 Gmax_508
RNAseq Atlas
Co-expression
🔗 Tissue-wdie 44 RNAseq (Enrei, Wm82)
GO analysis
BLAST
Short DNA mapper
Sequence analysis
Primer finder
Clustalw (fasta input)
ORF finder
Tm calculation
Download
Primer search tool
    
query (input):
! Enter target DNA sequence like below. For trial, just click "search" button. ATGGAGAAGAAGAAGGGTGAGCTAAAGTCAATTTTCCTTCCTTTCCTTTCCACTAGTCACATAATCCCGCTAGTGGACATGGCCAGACTCTTCGCCTTGCACGACGTCGACGTCACCATCATCACCACCGCACATAACGCCACCGTTTTCCAAAAGTCCATCGATTTAGATGCGAGTCGCGGTCGCCCCATCAGAACGCACGTTGTCAACTTCCCCGCCGCACAAGTGGGTCTCCCCGTTGGGATCGAAGCCTTCAACGTCGATACGCCTCGGGAAATGACCCCCAGAATCTACATGGGCCTATCCCTTCTCCAACAAGTCTTCGAAAAACTCTTCCATGACTTGCAACCGGATTTCATCGTCACCGACATGTTCCACCCTTGGAGTGTCGATGCTGCTGCTAAACTCGGCATTCCGAGGATCATGTTCCACGGCGCAAGTTATCTCGCTCGCTCCGCTGCGCACTCCGTTGAACAGTACGCACCCCACTTGGAAGCAAAATTCGACACCGACAAGTTCGTGTTACCTGGGTTACCCGATAACTTGGAGATGACGCGCTTGCAGTTGCCGGATTGGCTTAGGTCTCCGAATCAGTACACTGAACTGATGAGGACGATTAAGCAGTCAGAGAAAAAGAGTTACGGTTCACTTTTTAATAGTTTTTATGACCTCGAGAGTGCTTACTACGAGCATTACAAGAGCATCATGGGAACTAAGAGTTGGGGAATTGGACCGGTTTCGTTGTGGGCGAACCAGGATGCTCAAGATAAAGCTGCACGAGGGTATGCTAAAGAAGAAGAAGAGAAAGAAGGGTGGCTTAAGTGGCTCAACTCCAAAGCAGAGAGCTCTGTTTTGTATGTGAGTTTTGGGAGCATGAACAAGTTCCCTTACTCTCAGCTCGTTGAAATAGCACGTGCGCTTGAAGATTCGGGGCATGATTTTATCTGGGTGGTGAGGAAAAACGATGGGGGTGAAGGAGATAACTTTTTGGAGGAGTTTGAGAAGAGAATGAAGGAAAGTAACAAAGGATATTTAATATGGGGTTGGGCCCCACAGTTGTTGATACTGGAGAATCCTGCGATTGGAGGGTTGGTTACTCACTGTGGTTGGAACACGGTGGTGGAAAGCGTGAACGCGGGGTTGCCGATGGCGACGTGGCCTCTGTTTGCGGAGCATTTTTTCAACGAGAAGCTGGTGGTGGATGTGTTGAAGATTGGGGTGCCGGTGGGGGCGAAAGAGTGGAGGAACTGGAACGAGTTTGGGAGTGAGGTGGTGAAACGGGAGGAGATTGGAAACGCGATTGCTTCGTTGATGAGTGAGGAAGAAGAAGATGGAGGAATGAGGAAGAGAGCCAAGGAGCTAAGCGTTGCGGCGAAGAGTGCTATAAAGGTTGGTGGATCTTCGCACAACAACATGAAGGAATTGATTCGGGAGCTCAAGGAGATCAAGCTTTCCAAGGAGGCTCAAGAGACCGCACCCAATCCTTAA
thresholds:
Tm value :
  to  
  
|
   primer length (bp) :
  to  
  
|
   GC% :
  to  
  
seeking primers within:
bp from 5' end  
|
  
bp from 3' end  (*based on the 5'-position of Fw and Rv primers)
primer uniqueness analysis:
Soybean, Glycine max [ Enrei genome reference ver3.31, GFF=3.32 ]
Soybean, Glycine max [ Williams82 genome reference, Gmax_508 ]
Soybean, Glycine max [ Williams82 genome reference, Gmax_275 ]
Soybean, Glycine max [ Williams82 genome reference, Gmax_189 ]
Arabidopsis thaliana [ TAIR10 ]
--not using any genome reference to check uniqueness of primers--
[INFO] Please cite the following paper:
Yano et al. (2025)
Nature Genetics
57, 973-985.
[! Result will be shown below]